IEEE

A 2.46M Reads/s Seed-Extension Accelerator for Next-Generation Sequencing Using a String-Independent PE Array

Abstract: Advances in DNA-sequencing technology have far outpaced Moore's law, imposing significant challenges on the computationally intensive secondary analysis in the sequencing pipeline. An ...
IEEE

Linear Suffix Array Construction by Almost Pure Induced-Sorting

Abstract: We present a linear time and space suffix array (SA) construction algorithm called the SA-IS algorithm.The SA-IS algorithm is novel because of the LMS-substrings used for the problem ...
GitHub

A C++ implementation of a fast and memory efficient hash map/set for strings

Cache conscious hash map and hash set for strings based on the "Cache-conscious collision resolution in string hash tables." (Askitis Nikolas and Justin Zobel, 2005) paper. You can find some details ...
GitHub

Render JSX/Hyperscript to HTML strings, without VDOM

Need to use HTML strings (angular?) but want to use JSX? vhtml's got your back. vhtml intentionally does not transform JSX to a Virtual DOM, instead serializing it directly to HTML. However, it's ...